SOFTWARE
       
   
     
DIVERGE 3.0
  New function: Type I Analysis, Effective Number of Sites, Asymmetric Test for Type I, False Discovery Rate.
   
DIVERGE 2.0
  New function: Gu2001, Type II Divergence, Rate Variation among Sites(RVS), Ancestral Sequence Inference, Functional Distance Analysis.
   
DIVERGE 1.04
  Detecting functional divergence between member genes of a protein family based on (site-specific) shifted evolutionary rates after gene duplication or speciation.
   
Mgenome 1.0
  Finding the optimal trees for multiple genome rearrangement by signed reversals: For a given collection of genomes represented by signed permutations on genes, find a tree to connect all given genomes by reversal paths such that the number of all signed reversals is minimized.
   
NetDyn 1.0
  This program is to simulate gene network growing.
   
Please address your comments on our software to xgu@iastate.edu.